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I was thinking the same thing, but as far as I can tell the elements that need to be programmed are on the same board that had the part failure.  I did make an attempt to repair the damage on the board - I scraped away what was left of the burnt up ferrite bead and put a short in its place.  I then swapped this "repaired" board into the new charger that I had installed, but alas it didn't work - I got a different error message "Stop shut off engine" when trying to turn on the car.  Alas, it seems my board repair was unsuccessful.